Package: seq2R
Type: Package
Title: Simple Method to Detect Compositional Changes in Genomic
        Sequences
Version: 2.0.1
Date: 2024-09-27
Authors@R: c(person("Nora", "M. Villanueva",email= "nmvillanueva@uvigo.gal", role = c("aut", "cre"),
  comment = c(ORCID = "0000-0001-8085-2745")),
  person("Marta", "Sestelo",email= "sestelo@uvigo.gal", role = "aut", comment = c(ORCID = "0000-0003-4284-6509")),
  person("Alan", "Miller", role = "ctb", comment = c("FORTRAN code lsq.f90: weighted least-squares module"))
  )
Maintainer: Nora M. Villanueva <nmvillanueva@uvigo.gal>
Depends: R (>= 2.15.1)
Description: This software is useful for loading '.fasta' or '.gbk'
        files, and for retrieving sequences from 'GenBank' dataset
        <https://www.ncbi.nlm.nih.gov/genbank/>. This package allows to
        detect differences or asymmetries based on nucleotide
        composition by using local linear kernel smoothers. Also, it is
        possible to draw inference about critical points (i. e. maximum
        or minimum points) related with the derivative curves.
        Additionally, bootstrap methods have been used for estimating
        confidence intervals and speed computational techniques
        (binning techniques) have been implemented in 'seq2R'.
Imports: seqinr
License: GPL
LazyData: true
NeedsCompilation: yes
Packaged: 2026-06-05 07:06:18 UTC; root
Author: Nora M. Villanueva [aut, cre]
        (<https://orcid.org/0000-0001-8085-2745>), Marta Sestelo [aut]
        (<https://orcid.org/0000-0003-4284-6509>), Alan Miller [ctb]
        (FORTRAN code lsq.f90: weighted least-squares module)
Config/pak/sysreqs: zlib1g-dev
Repository: https://noramvillanueva.r-universe.dev
Date/Publication: 2024-11-28 17:26:55 UTC
RemoteUrl: https://github.com/noramvillanueva/seq2r
RemoteRef: HEAD
RemoteSha: 06f50656ff185d1f1132cca64a35539f1d0d314e