{
  "_id": "6acf547dd9de2f3f33fcb23a",
  "Package": "seq2R",
  "Type": "Package",
  "Title": "Simple Method to Detect Compositional Changes in Genomic\nSequences",
  "Version": "2.0.1",
  "Date": "2024-09-27",
  "Authors@R": "c(person(\"Nora\", \"M. Villanueva\",email= \"nmvillanueva@uvigo.gal\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-8085-2745\")),\nperson(\"Marta\", \"Sestelo\",email= \"sestelo@uvigo.gal\", role = \"aut\", comment = c(ORCID = \"0000-0003-4284-6509\")),\nperson(\"Alan\", \"Miller\", role = \"ctb\", comment = c(\"FORTRAN code lsq.f90: weighted least-squares module\"))\n)",
  "Maintainer": "Nora M. Villanueva <nmvillanueva@uvigo.gal>",
  "Description": "This software is useful for loading '.fasta' or '.gbk'\nfiles, and for retrieving sequences from 'GenBank' dataset\n<https://www.ncbi.nlm.nih.gov/genbank/>. This package allows to\ndetect differences or asymmetries based on nucleotide\ncomposition by using local linear kernel smoothers. Also, it is\npossible to draw inference about critical points (i. e. maximum\nor minimum points) related with the derivative curves.\nAdditionally, bootstrap methods have been used for estimating\nconfidence intervals and speed computational techniques\n(binning techniques) have been implemented in 'seq2R'.",
  "License": "GPL",
  "LazyData": "true",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-10-14 09:44:19 UTC",
    "User": "root"
  },
  "Author": "Nora M. Villanueva [aut, cre]\n(<https://orcid.org/0000-0001-8085-2745>), Marta Sestelo [aut]\n(<https://orcid.org/0000-0003-4284-6509>), Alan Miller [ctb]\n(FORTRAN code lsq.f90: weighted least-squares module)",
  "Config/pak/sysreqs": "zlib1g-dev",
  "Repository": "https://noramvillanueva.r-universe.dev",
  "Date/Publication": "2024-11-28 17:26:55 UTC",
  "RemoteUrl": "https://github.com/noramvillanueva/seq2r",
  "RemoteRef": "HEAD",
  "RemoteSha": "06f50656ff185d1f1132cca64a35539f1d0d314e",
  "_user": "noramvillanueva",
  "_type": "src",
  "_file": "seq2R_2.0.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/9e56e0f704c45e89f9a3a9131d39289f74772360e16af4d43a7a5493fcdc5081",
  "_filesize": 192340,
  "_sha256": "9e56e0f704c45e89f9a3a9131d39289f74772360e16af4d43a7a5493fcdc5081",
  "_expires": "2027-01-22T10:07:55.000Z",
  "_created": "2026-10-14T09:44:19.000Z",
  "_published": "2026-10-14T10:07:56.975Z",
  "_buildurl": "https://github.com/r-universe/noramvillanueva/actions/runs/38544173958",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 115787411825,
      "time": 123,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11883977136"
    },
    {
      "job": 115787412039,
      "time": 98,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11884096886"
    },
    {
      "job": 115787411847,
      "time": 87,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11883054979"
    },
    {
      "job": 115787411885,
      "time": 107,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11883319215"
    },
    {
      "job": 115787411823,
      "time": 109,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11884602487"
    },
    {
      "job": 115787411907,
      "time": 438,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11883459781"
    },
    {
      "job": 115787411901,
      "time": 111,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11885500675"
    },
    {
      "job": 115787411938,
      "time": 380,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11883513698"
    },
    {
      "job": 115786123454,
      "time": 185,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11883054675"
    },
    {
      "job": 115787411966,
      "time": 87,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11883558047"
    },
    {
      "job": 115787412044,
      "time": 319,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11884172317"
    },
    {
      "job": 115787411874,
      "time": 150,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11883488681"
    },
    {
      "job": 115787411897,
      "time": 92,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11883612613"
    },
    {
      "job": 115787411921,
      "time": 319,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11883828067"
    },
    {
      "job": 115787412003,
      "time": 93,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11883184682"
    }
  ],
  "_upstream": "https://github.com/noramvillanueva/seq2r",
  "_commit": {
    "id": "06f50656ff185d1f1132cca64a35539f1d0d314e",
    "author": "Nora M. Villanueva <nmvillanueva@uvigo.gal>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Update README.md\n\nadded downloads per month",
    "time": 1732814815
  },
  "_maintainer": {
    "name": "Nora M. Villanueva",
    "email": "nmvillanueva@uvigo.gal",
    "login": "noramvillanueva",
    "linkedin": "in/nora-m-villanueva-phd-9073781b",
    "orcid": "0000-0001-8085-2745",
    "twitter": "@noramvillanueva",
    "description": "PhD, Assistant Professor at Dep. Statistics and O.R. (UVIGO).",
    "uuid": 8126348
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.15.1",
      "role": "Depends"
    },
    {
      "package": "seqinr",
      "role": "Imports"
    }
  ],
  "_owner": "noramvillanueva",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "bootstrap",
    "change-points",
    "dna-sequences",
    "genome-analysis",
    "machine-learning",
    "nonparametric-statistics",
    "regression",
    "fortran"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "noramvillanueva",
      "count": 20,
      "uuid": 8126348
    },
    {
      "user": "sestelo",
      "count": 1,
      "uuid": 7955346
    }
  ],
  "_userbio": {
    "uuid": 8126348,
    "type": "user",
    "name": "Nora M. Villanueva",
    "followers": 27,
    "description": "PhD, Assistant Professor at Dep. Statistics and O.R. (UVIGO)."
  },
  "_downloads": {
    "count": 178,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/seq2R"
  },
  "_devurl": "https://github.com/noramvillanueva/seq2r",
  "_searchresults": 11,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md",
    "extra/seq2R.html",
    "LICENSE"
  ],
  "_homeurl": "https://github.com/noramvillanueva/seq2r",
  "_realowner": "noramvillanueva",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0",
      "date": "2012-08-23"
    },
    {
      "version": "1.1.0",
      "date": "2023-01-06"
    },
    {
      "version": "2.0.0",
      "date": "2023-04-20"
    },
    {
      "version": "2.0.1",
      "date": "2024-09-30"
    }
  ],
  "_exports": [
    "critical",
    "find.points",
    "plot.change.points",
    "print.change.points",
    "read.all",
    "read.genbank",
    "transform"
  ],
  "_datasets": [
    {
      "name": "mtDNAhum",
      "title": "Human Mitochondrial DNA",
      "object": "mtDNAhum",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "seq2R-package",
      "title": "Simple method to detect compositional changes in genomic sequences",
      "topics": [
        "seq2R-package",
        "seq2R"
      ]
    },
    {
      "page": "critical",
      "title": "Critical points (maxima and minima)",
      "topics": [
        "critical"
      ]
    },
    {
      "page": "find.points",
      "title": "Simple method to detect compositional changes in genomic sequences",
      "topics": [
        "find.points"
      ]
    },
    {
      "page": "mtDNAhum",
      "title": "Human Mitochondrial DNA",
      "topics": [
        "mtDNAhum"
      ]
    },
    {
      "page": "plot.change.points",
      "title": "Visualization of change.points objects",
      "topics": [
        "plot.change.points"
      ]
    },
    {
      "page": "print.change.points",
      "title": "Short find.points summary",
      "topics": [
        "print.change.points"
      ]
    },
    {
      "page": "read.all",
      "title": "Read FASTA and GBK formatted files",
      "topics": [
        "read.all"
      ]
    },
    {
      "page": "read.genbank",
      "title": "Read DNA sequences from GenBank via internet",
      "topics": [
        "read.genbank"
      ]
    },
    {
      "page": "transform",
      "title": "Convert biological sequences into binary code",
      "topics": [
        "transform"
      ]
    }
  ],
  "_readme": "https://github.com/noramvillanueva/seq2r/raw/HEAD/README.md",
  "_rundeps": [
    "ade4",
    "lattice",
    "MASS",
    "nlme",
    "pixmap",
    "Rcpp",
    "RcppArmadillo",
    "segmented",
    "seqinr",
    "sp"
  ],
  "_sysdeps": [
    {
      "shlib": "libgfortran",
      "package": "libgfortran5",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "fortran",
      "homepage": "http://gcc.gnu.org/",
      "description": "Runtime library for GNU Fortran applications"
    }
  ],
  "_score": 2.740362689494244,
  "_indexed": true,
  "_nocasepkg": "seq2r",
  "_universes": [
    "noramvillanueva"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.0.1",
      "date": "2026-10-14T09:46:28.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "06f50656ff185d1f1132cca64a35539f1d0d314e",
      "fileid": "https://r2.ropensci.org/3198b16100d6c9a5675362dbee4c08b30efd1175995eb0ccfd370e791e8590dd",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/noramvillanueva/actions/runs/38544173958"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.0.1",
      "date": "2026-10-14T09:46:04.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "06f50656ff185d1f1132cca64a35539f1d0d314e",
      "fileid": "https://r2.ropensci.org/4e11b4b9657964563da5861d7abacae8450a3d17310d2d0433f972339b4d17be",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/noramvillanueva/actions/runs/38544173958"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "2.0.1",
      "date": "2026-10-14T09:45:54.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "06f50656ff185d1f1132cca64a35539f1d0d314e",
      "fileid": "https://r2.ropensci.org/1f5aed0c5e1ff3e6b566b3412352d405a63d8e4cdb8234bc0b4f97c7e7d89c02",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/noramvillanueva/actions/runs/38544173958"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "2.0.1",
      "date": "2026-10-14T09:46:07.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "06f50656ff185d1f1132cca64a35539f1d0d314e",
      "fileid": "https://r2.ropensci.org/2fb27064df0c65e26885cb9d6a564da9f80051bfbf79eb408dc0055c541738c4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/noramvillanueva/actions/runs/38544173958"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.0.1",
      "date": "2026-10-14T10:01:53.000Z",
      "arch": "aarch64",
      "commit": "06f50656ff185d1f1132cca64a35539f1d0d314e",
      "fileid": "https://r2.ropensci.org/53122c80a044db1fdc6cd9d74432ca1347e51850d0681fcfae5789618b0fc45f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/noramvillanueva/actions/runs/38544173958"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.0.1",
      "date": "2026-10-14T09:50:37.000Z",
      "arch": "x86_64",
      "commit": "06f50656ff185d1f1132cca64a35539f1d0d314e",
      "fileid": "https://r2.ropensci.org/2b1c125e9af0ec2f3d68ad3ef0ed714534a9459873b96f6dc301e1dd8b29084c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/noramvillanueva/actions/runs/38544173958"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "2.0.1",
      "date": "2026-10-14T10:07:05.000Z",
      "arch": "aarch64",
      "commit": "06f50656ff185d1f1132cca64a35539f1d0d314e",
      "fileid": "https://r2.ropensci.org/b19a634157e5c768d95fc28a8e4c13b538fdb984086f072616fa215792f4100d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/noramvillanueva/actions/runs/38544173958"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "2.0.1",
      "date": "2026-10-14T09:49:05.000Z",
      "arch": "x86_64",
      "commit": "06f50656ff185d1f1132cca64a35539f1d0d314e",
      "fileid": "https://r2.ropensci.org/6377b9625f0737148f2befdbcdc63a0bf0fce2a9b1e5e41d74dad6a1e5feeec0",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/noramvillanueva/actions/runs/38544173958"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.0.1",
      "date": "2026-10-14T09:46:07.000Z",
      "arch": "emscripten",
      "commit": "06f50656ff185d1f1132cca64a35539f1d0d314e",
      "fileid": "https://r2.ropensci.org/c357963aeea3ae73a98cd38384bf2105c9dd3b7434e7f519d08946d260870ef9",
      "status": "success",
      "buildurl": "https://github.com/r-universe/noramvillanueva/actions/runs/38544173958"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.0.1",
      "date": "2026-10-14T09:49:02.000Z",
      "arch": "aarch64",
      "commit": "06f50656ff185d1f1132cca64a35539f1d0d314e",
      "fileid": "https://r2.ropensci.org/d4dd9ec9e52deeb9d16c017458f3d42dd75b0819af7b58ee2666348e1d0ed6e4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/noramvillanueva/actions/runs/38544173958"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.0.1",
      "date": "2026-10-14T09:45:41.000Z",
      "arch": "x86_64",
      "commit": "06f50656ff185d1f1132cca64a35539f1d0d314e",
      "fileid": "https://r2.ropensci.org/3041d4d92c91f9b5e0d2e5c7fc8e3c8fcc16ecc83364c72db1185789df0f3001",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/noramvillanueva/actions/runs/38544173958"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.0.1",
      "date": "2026-10-14T09:45:37.000Z",
      "arch": "x86_64",
      "commit": "06f50656ff185d1f1132cca64a35539f1d0d314e",
      "fileid": "https://r2.ropensci.org/90b94c985519644869c28cc67dc194195eafd22f6dfb0268348bf41c84605958",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/noramvillanueva/actions/runs/38544173958"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "2.0.1",
      "date": "2026-10-14T09:48:59.000Z",
      "arch": "aarch64",
      "commit": "06f50656ff185d1f1132cca64a35539f1d0d314e",
      "fileid": "https://r2.ropensci.org/15d9389df860043cb4180a644cced96a5fdc5bc83089705e5f54197aeaa90548",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/noramvillanueva/actions/runs/38544173958"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "2.0.1",
      "date": "2026-10-14T09:45:37.000Z",
      "arch": "x86_64",
      "commit": "06f50656ff185d1f1132cca64a35539f1d0d314e",
      "fileid": "https://r2.ropensci.org/91234a2af04fb82cd34b6b9b467cf8254a5212b2b9676984e94cdab6834cb551",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/noramvillanueva/actions/runs/38544173958"
    }
  ]
}